Molecule Tutorials - Herong's Tutorial Examples - v1.26, by Herong Yang
Compile PyMol Source Code
This section provides a tutorial on how to download PyMol open source edition source code and compile it on macOS. Compilation failed with 'GL/glew.h' file not found.
If you want to install the open source edition of PyMol from source code, you can try these steps:
1. Go to PyMol GitHub repository at github.com/schrodinger/pymol-open-source.
2. Click "Clone or Download > Download ZIP". A ZIP file will be downloaded and unzip in your ~/Download directory.
3. Go to downloaded source directory ~/Download/pymol-open-source-master. And verify source code files.
4. Run the following command to try to compile the code:
herong$ cd ~/Download/pymol-open-source-master
herong$ python setup.py install --prefix=~/pymol
running install
running build
running build_py
running build_ext
building 'pymol._cmd' extension
cc -fno-strict-aliasing -fno-common -dynamic -arch x86_64 ...
c++ -std=c++11 -arch x86_64 -arch i386 -pipe -D_PYMOL_LIBPNG ...
layer0/os_gl.h:68:9: fatal error: 'GL/glew.h' file not found
#include<GL/glew.h>
^~~~~~~~~~~
1 error generated.
...
Obviously, the compilation process failed. It looks like missing some required package. I will check on this later.
Table of Contents
Molecule Names and Identifications
Nucleobase, Nucleoside, Nucleotide, DNA and RNA
Install PyMol Incentive Edition on macOS
Install PyMol Open Source Edition
Install Open Source PyMol with Homedrew
Install Open Source PyMol with Fink
ChEMBL Database - European Molecular Biology Laboratory
PubChem Database - National Library of Medicine
INSDC (International Nucleotide Sequence Database Collaboration)
HGNC (HUGO Gene Nomenclature Committee)