ChEMBL Database - European Molecular Biology Laboratory

This chapter provides quick introductions about ChEMBL database provided by EMBL (European Molecular Biology Laboratory).

What Is ChEMBL

ChEMBL Speical Web Portals

Download ChEMBL Database

ChEMBL FTP Repository

ChEMBL Web Services API

Call ChEMBL Data Web Service Directly

ChEMBL Data Resource - molecule

ChEMBL Data Resource - activity

ChEMBL Data Resource - assay

ChEMBL Data Resource - document

ChEMBL Data Resource - target

ChEMBL Data Resource - chembl_id_lookup

ChEMBL Related Tools

chembl_webresource_client - Python Client

chembl_webresource_client - Usage Examples

ChEMBL Terminologies

Takeaways:

Table of Contents

 About This Book

 Introduction of Molecules

 Molecule Names and Identifications

 Protein and Amino Acid

 Nucleobase, Nucleoside, Nucleotide, DNA and RNA

 Gene and Chromosome

 Protein Kinase (PK)

 SDF (Structure Data File)

 RDKit: Open-Source Cheminformatics Software

 PyMol Installation

 PyMol GUI and CLI

 PyMol Selections

 PyMol Editing Functions

 PyMol Measurement Functions

 PyMol Movie Functions

 PyMol Python Integration

 PyMol Object Functions

ChEMBL Database - European Molecular Biology Laboratory

 PubChem Database - National Library of Medicine

 PDB (Protein Data Bank)

 INSDC (International Nucleotide Sequence Database Collaboration)

 Resources and Tools

 Molecule Related Terminologies

 References

 Full Version in PDF/EPUB