Peptide, Peptide Bond, Amino Acid Residues

This section provides a quick introduction of peptide, which a chain of two or more amino acid residues linked together by peptide bonds.

What Is Peptide? - A peptide is a chain of two or more amino acid residues linked together by peptide bonds. A peptide is a polymer, because it consists entirely of a number of similar units, amino acid residues, bonded together.

What Is Condensation Reaction of Amino Acids A condensation reaction of amino acids is a chemical reaction between two acid reacts. During the condensation reaction, the carboxyl group an amino acid reacts to the amino group of another amino acid to form a new covalent bond between the carbon atom and the nitrogen atom. A water molecule is formed at the same time. See the diagram below (source: philpoteducation.com):

Condensation Reaction of Two Amino Acids
Condensation Reaction of Two Amino Acids

What Is Peptide Bond? - A peptide bond is the covalent bond between the carbon atom and the nitrogen atom resulted from a condensation reaction between two amino acids.

What Is Amino Acid Residue? - An amino acid residue is the remaining structure of an amino acid after a condensation reaction with another amino acid.

The term "peptide" can have a prefix to refer to the number of amino acid residues in the peptide, like:

Dipeptide: consists of two amino acid residues
Tripeptide: has three amino acid residues
Tetrapeptide: has four amino acid residues
Pentapeptide: has five amino acid residues
Hexapeptide: has six amino acid residues
...

A protein is actually a large peptide, usually has 20 or more amino acid residues. But a peptide may not be a protein, see the next section.

Table of Contents

 About This Book

 Introduction of Molecules

 Molecule Names and Identifications

 Molecule Mass and Weight

Protein and Amino Acid

 What Is Amino Acid

 The 20 Common Amino Acids

Peptide, Peptide Bond, Amino Acid Residues

 What Is Protein

 Protein Structure Levels

 Alpha Helix and Beta Sheet

 Protein Visualization - Ribbon Diagram

 Composed Proteins or Protein Complexes

 wwpdb.org - Worldwide PDB (Protein Data Bank)

 What Is FASTA

 Nucleobase, Nucleoside, Nucleotide, DNA and RNA

 Gene and Chromosome

 Protein Kinase (PK)

 DNA Sequencing

 Gene Mutation

 SDF (Structure Data File)

 PyMol Installation

 PyMol GUI and CLI

 PyMol Selections

 PyMol Editing Functions

 PyMol Measurement Functions

 PyMol Movie Functions

 PyMol Python Integration

 PyMol Object Functions

 ChEMBL Database - European Molecular Biology Laboratory

 PubChem Database - National Library of Medicine

 PDB (Protein Data Bank)

 INSDC (International Nucleotide Sequence Database Collaboration)

 HGNC (HUGO Gene Nomenclature Committee)

 Relocated Tutorials

 Resources and Tools

 Molecule Related Terminologies

 References

 Full Version in PDF/EPUB