Gene Address on Chromosome

This section provides a quick introduction of the address of a human gene to specify its location on human karyotype.

The address (or location) of a specific gene on a Chromosome is expressed as a cytogenetic location in a standard format shown below:

<chromosome><arm><region><band><sub-band>

where:
  chromosome - Is the index of the chromosome in the karyotype.
  arm - Is "p" or "q", indicating the short arm or the long arm.
  region - Is the index of the region in the arm.
  band - Is the index of the band in the region.
  sub-band - Is the index of the sub-band in the band.

Note that each chromosome is divided into two sections (arms) based on the location of a narrowing (constriction) called the centromere. By convention, the shorter arm is called "p", and the longer arm is called "q".

The indexes of region, bands, and sub-bands are all counted in the direction from the centromere to the end of the arm.

The picture (source: ghr.nlm.nih.gov) below shows an example of the address of gene CFTR (Cystic Fibrosis Transmembrane conductance Regulator): 7q31.2

Gene Address as Location on Chromosome
Gene Address as Location on Chromosome

For more information on human genes, their addresses and functions, see https://ghr.nlm.nih.gov/gene.

Table of Contents

 About This Book

 Introduction of Molecules

 Molecule Names and Identifications

 Molecule Mass and Weight

 Protein and Amino Acid

 Nucleobase, Nucleoside, Nucleotide, DNA and RNA

Gene and Chromosome

 What Is Gene

 What Is Human Genome

Gene Address on Chromosome

 DNA Coding and Codons

 Gene Expression - ­Building Proteins

 Genetic Transcription - Creating mRNA

 Genetic Translation - Creating Protein

 DNA Gene Sequence - Exons and Introns

 Chromosome Replication (or DNA Replication)

 Protein Kinase (PK)

 DNA Sequencing

 Gene Mutation

 SDF (Structure Data File)

 PyMol Installation

 PyMol GUI and CLI

 PyMol Selections

 PyMol Editing Functions

 PyMol Measurement Functions

 PyMol Movie Functions

 PyMol Python Integration

 PyMol Object Functions

 ChEMBL Database - European Molecular Biology Laboratory

 PubChem Database - National Library of Medicine

 PDB (Protein Data Bank)

 INSDC (International Nucleotide Sequence Database Collaboration)

 HGNC (HUGO Gene Nomenclature Committee)

 Relocated Tutorials

 Resources and Tools

 Molecule Related Terminologies

 References

 Full Version in PDF/EPUB