Molecule Tutorials - Herong's Tutorial Examples - v1.26, by Herong Yang
ChEMBL Related Tools
This section provides a quick summary of tools related to ChEMBL database.
Here is a list of ChEMBL related tools found on the Internet:
https://github.com/chembl/chembl_webresource_client: Official Python client for accessing ChEMBL API with some nice functionalities:
ChEMBL Web service tools: Search molecules, targets, etc. Find similar compounds and perform substructure search Get compound properties and images Find approved drugs filtered by keyword like LUNG CARCINOMA Search activities ... Standalone tools: Display images of local compound files Convert image to SMILES Compute fingerprints of compounds Compute Maximal Common Substructure Compute various molecular properties
https://github.com/mgalardini/chembl_tools - Some Python utility scripts based on chembl_webresource_client:
get_chembl_ids get_similar_molecules get_target_ids molecule2details.py protein2activity.py protein2mechanism.py uniprot2chembl.py
Table of Contents
Molecule Names and Identifications
Nucleobase, Nucleoside, Nucleotide, DNA and RNA
►ChEMBL Database - European Molecular Biology Laboratory
Call ChEMBL Data Web Service Directly
ChEMBL Data Resource - molecule
ChEMBL Data Resource - activity
ChEMBL Data Resource - document
ChEMBL Data Resource - chembl_id_lookup
chembl_webresource_client - Python Client
chembl_webresource_client - Usage Examples
chembl_webresource_client - RetryError Exception
PubChem Database - National Library of Medicine
INSDC (International Nucleotide Sequence Database Collaboration)
HGNC (HUGO Gene Nomenclature Committee)