Molecule Tutorials - Herong's Tutorial Examples - v1.26, by Herong Yang
ChEMBL Data Resource - document
Provides a tutorial example on what are ChEMBL 'document' data resources and how to access them with REST API.
"document" is a primary data resource type provided by ChEMBL API. It represents a single document where biological activities were reported.
1. Get a list of all documents.
herong$ curl https://www.ebi.ac.uk/chembl/api/data/document <response> <documents> <document> <abstract/> <authors/> <doc_type>DATASET</doc_type> <document_chembl_id>CHEMBL1158643</document_chembl_id> ... </document> <document> <abstract/> <authors>Clader JW.</authors> <doc_type>PUBLICATION</doc_type> <document_chembl_id>CHEMBL1139451</document_chembl_id> ... </document> ... </documents> <page_meta> <limit>20</limit> <next>/chembl/api/data/document?limit=20&offset=20</next> <offset/> <previous/> <total_count>80480</total_count> </page_meta> </response>
2. Get the document of a given id.
herong$ curl https://www.ebi.ac.uk/chembl/api/data/assay/CHEMBL615117 <document> <abstract/> <authors>Clader JW.</authors> <doc_type>PUBLICATION</doc_type> <document_chembl_id>CHEMBL1139451</document_chembl_id> <doi>10.1021/jm030283g</doi> <doi_chembl/> <first_page>1</first_page> <issue>1</issue> <journal>J. Med. Chem.</journal> <journal_full_title>Journal of medicin al chemistry.</journal_full_title> <last_page>9</last_page> <patent_id/> <pubmed_id>14695813</pubmed_id> <src_id>1</src_id> <title>The discovery of ezetimibe: a view from outside ...</title> <volume>47</volume> <year>2004</year> </document>
Foreign keys to other resources: None.
Documents are classified as the following types:
PUBLICATION
Table of Contents
Molecule Names and Identifications
Nucleobase, Nucleoside, Nucleotide, DNA and RNA
►ChEMBL Database - European Molecular Biology Laboratory
Call ChEMBL Data Web Service Directly
ChEMBL Data Resource - molecule
ChEMBL Data Resource - activity
►ChEMBL Data Resource - document
ChEMBL Data Resource - chembl_id_lookup
chembl_webresource_client - Python Client
chembl_webresource_client - Usage Examples
chembl_webresource_client - RetryError Exception
PubChem Database - National Library of Medicine
INSDC (International Nucleotide Sequence Database Collaboration)
HGNC (HUGO Gene Nomenclature Committee)