What Is PDBe (Protein Data Bank in Europe)

This section provides a quick introduction of the PDBe (Protein Data Bank Europe), which is a member organization of Worldwide PDB (wwPDB).

What Is PDBe (Protein Data Bank in Europe)? - PBDe (Protein Data Bank in Europe) is a member organization of Worldwide PDB (wwPDB). It provides rich information about all PDB entries, multiple search and browse facilities, advanced services including PDBePISA, PDBeFold and PDBeMotif, advanced visualization and validation of NMR and EM structures, tools for bioinformaticians.

PDBe is the European resource for the collection, organization and dissemination of data on biological macromolecular structures.

PDBe offers many search, deposition and viewer tools specialized in different areas such as Structural biologists, Bioinformaticians, Computational chemists, Students and teachers, Life scientists, Medicinal chemists, Journal editors & referees, etc.

For more information on PDBe, visit https://www.ebi.ac.uk/pdbe/ Website.

Table of Contents

 About This Book

 Introduction of Molecules

 Molecule Names and Identifications

 Molecule Mass and Weight

 Protein and Amino Acid

 Nucleobase, Nucleoside, Nucleotide, DNA and RNA

 Gene and Chromosome

 Protein Kinase (PK)

 DNA Sequencing

 Gene Mutation

 SDF (Structure Data File)

 PyMol Installation

 PyMol GUI and CLI

 PyMol Selections

 PyMol Editing Functions

 PyMol Measurement Functions

 PyMol Movie Functions

 PyMol Python Integration

 PyMol Object Functions

 ChEMBL Database - European Molecular Biology Laboratory

 PubChem Database - National Library of Medicine

PDB (Protein Data Bank)

 What Is PDB (Protein Data Bank)

 What Is CRSB (Research Collaboratory for Structural Bioinformatics)

What Is PDBe (Protein Data Bank in Europe)

 What Is PDBj (Protein Data Bank Japan)

 VR molecular viewer by PDBj

 INSDC (International Nucleotide Sequence Database Collaboration)

 HGNC (HUGO Gene Nomenclature Committee)

 Relocated Tutorials

 Resources and Tools

 Molecule Related Terminologies

 References

 Full Version in PDF/EPUB