Cheminformatics Tutorials - Herong's Tutorial Examples - v2.01, by Herong Yang
Install StoneMIND Collector Client on Windows
This section provides a tutorial example on how to install StoneMIND Collector client on a Windows computer.
StoneMIND Collector seems to be a good OCSR (Optical Chemical Structure Recognition) product. Here is what I did to install it on my Windows computer.
1. Go to StoneMIND Collector Website at https://www.stonewise.cn/mol_product.
2. Open the Client Download option list and select "Windows 64-Bit" to start download.
3. Save the downloaded file StoneMIND_Collector_setup_channel2_bit64.exe to a temporary folder.
4. Run the downloaded file to start installation. And follow instructions to finish installation.
5. Click Start button and run "StoneMIND Collector". I see the StoneMIND Collector window with menu and instructions in Chinese.
Now I am ready to use the StoneMIND Collector Client module.
Table of Contents
SMILES (Simplified Molecular-Input Line-Entry System)
Open Babel: The Open Source Chemistry Toolbox
Using Open Babel Command: "obabel"
Generating SVG Pictures with Open Babel
Substructure Search with Open Babel
Similarity Search with Open Babel
Fingerprint Index for Fastsearch with Open Babel
Stereochemistry with Open Babel
Command Line Tools Provided by Open Babel
RDKit: Open-Source Cheminformatics Software
rdkit.Chem.rdchem - The Core Module
rdkit.Chem.rdmolfiles - Molecular File Module
rdkit.Chem.rdDepictor - Compute 2D Coordinates
rdkit.Chem.Draw - Handle Molecule Images
Molecule Substructure Search with RDKit
rdkit.Chem.rdmolops - Molecule Operations
Daylight Fingerprint Generator in RDKit
Morgan Fingerprint Generator in RDKit
RDKit Performance on Substructure Search
Introduction to Molecular Fingerprints
►OCSR (Optical Chemical Structure Recognition)
StoneMIND Collector - Information Extraction System
►Install StoneMIND Collector Client on Windows
Use StoneMIND Collector on Windows
Stop StoneMIND Collector on Windows
Use StoneMIND Collector Web Interface
AlphaFold - Protein Structure Prediction