Molecule Tutorials - Herong's Tutorial Examples - v1.26, by Herong Yang
PyMol Python API Only Functions
This section provides a quick introduction on PyMol Python API only functions. They are not available in the PyMol command line interface.
As mentioned previously, all PyMol commands are covered by the Python API. And there are additional functions supported only in the API, not in the command line interface. Here is a list of those API only functions:
cmd.exp_path cmd.extend cmd.extendaa cmd.find_pairs cmd.get_atom_coords cmd.get_cifstr cmd.get_color_index cmd.get_color_indices cmd.get_color_tuple cmd.get_coords cmd.get_coordset cmd.get_fastastr cmd.get_frame cmd.get_legal_name cmd.get_model cmd.get_names cmd.get_names_of_type cmd.get_object_list cmd.get_object_matrix cmd.get_object_state cmd.get_object_ttt cmd.get_pdbstr cmd.get_phipsi cmd.get_raw_alignment cmd.get_scene_list cmd.get_session cmd.get_setting_boolean cmd.get_setting_float cmd.get_setting_int cmd.get_setting_text cmd.get_setting_tuple cmd.get_state cmd.get_str cmd.get_unused_name cmd.get_volume_field cmd.get_volume_histogram cmd.get_wizard cmd.get_wizard_stack cmd.load_brick cmd.load_callback cmd.load_cgo cmd.load_coords cmd.load_coordset cmd.load_map cmd.load_model cmd.load_object cmd.read_mmodstr cmd.read_molstr cmd.read_pdbstr cmd.read_sdfstr cmd.read_xplorstr cmd.select_list cmd.set_frame cmd.set_object_color cmd.set_object_ttt cmd.set_session cmd.set_state_order cmd.set_wizard cmd.set_wizard_stack cmd.transform_object cmd.transform_selection cmd.translate_atom
Table of Contents
Molecule Names and Identifications
Nucleobase, Nucleoside, Nucleotide, DNA and RNA
Run Python Statements from PyMol
Launch PyMol from Python Interpreter
►PyMol Python API Only Functions
ChEMBL Database - European Molecular Biology Laboratory
PubChem Database - National Library of Medicine
INSDC (International Nucleotide Sequence Database Collaboration)
HGNC (HUGO Gene Nomenclature Committee)