PyMol Object Functions

Molecule Tutorials - Herong's Tutorial Examples

∟PyMol Object Functions

This section provides a quick introduction on loading molecule structures into different objects and visualize/edit them independently in PyMol.

What Is Object in PyMol

Visualize Objects Independently

Edit Objects Independently

Takeaways:

PyMol uses the "object" concept to represent a unit of molecule structures loaded from a file.
PyMol can visualize objects independently with different representation styles.
PyMol can modify objects independently in the model space using "translate", "rotate", and other commands.

Table of Contents

About This Book

Introduction of Molecules

Molecule Names and Identifications

Protein and Amino Acid

Nucleobase, Nucleoside, Nucleotide, DNA and RNA

Gene and Chromosome

Protein Kinase (PK)

SDF (Structure Data File)

RDKit: Open-Source Cheminformatics Software

PyMol Installation

PyMol GUI and CLI

PyMol Selections

PyMol Editing Functions

PyMol Measurement Functions

PyMol Movie Functions

PyMol Python Integration

►PyMol Object Functions

ChEMBL Database - European Molecular Biology Laboratory

PubChem Database - National Library of Medicine

PDB (Protein Data Bank)

INSDC (International Nucleotide Sequence Database Collaboration)

Resources and Tools

Molecule Related Terminologies

Full Version in PDF/EPUB